Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs1529499 chr5:77721431 T/C 2.62E-5 173 18.37 26.07 21.3 KM Plot
UCEC rs1529500 chr5:77721643 C/T 3.47E-5 172 18.37 26.27 21.08 KM Plot
UCEC rs153822 chr5:14627833 A/G 0 174 22.38 25.65 1.48 KM Plot
UCEC rs1560195 chr5:77701913 A/G 4.57E-5 171 21.3 25.87 16.3 KM Plot
UCEC rs1560196 chr5:77701982 G/C 4.57E-5 171 21.3 25.87 16.3 KM Plot
UCEC rs1625172 chr10:122677104 G/C 0.000136 172 22.57 24 17.65 KM Plot
UCEC rs16445 chr22:50297034 CCT/C 4.04E-9 173 22.8 20.93 14.63 KM Plot
UCEC rs1659593 chr10:122685090 T/A 0.000136 172 22.57 24 17.65 KM Plot
UCEC rs16828734 chr2:233127722 A/T 6.9E-8 171 22.7 17.08 10.2 KM Plot
UCEC rs16867131 chr2:180848651 A/G 9.73E-5 174 13.63 22.7 22.57 KM Plot
UCEC rs16926528 chr8:61785001 A/T 0.000135 174 16.87 23.93 22.7 KM Plot
UCEC rs16947078 chr17:45825500 A/G 0.000114 174 23.82 21.03 14.23 KM Plot
UCEC rs17002947 chr22:42688532 C/T 5.76E-6 174 9.32 25.3 22.57 KM Plot
UCEC rs17022045 chr2:98261688 C/G 3.25E-10 172 25.67 18.67 2.4 KM Plot
UCEC rs17079818 chr3:47952843 T/C 7.73E-7 171 22.6 22.25 11.53 KM Plot